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This page contains scientific
visualization of chemical structures and atomic orbitals presented as QuickTime
movies. There is also coverage on the discovery of the atomic structure
illustrated with captivating 3D computer animation:
Atomic
Orbitals: Millikan's oil drop experiment, Bohr model, wave function
of the 3dxz orbital, electron distribution of a 2s orbital, sp2 hybrid orbitals,
VRML of the atomic orbitals.
Visualization of Molecular Structures: DNA, protein,
HIV protease, aspirin, ethanol, and 2-butanol.
Millikan's oil drop experiment: 3D computer animation, with audio
narration, explain to you about the Millikan's oil drop experiment, which
led to the determination of the charge of an electron.
Sample movie from the Atomic Orbitals
CD in three segments for easy download:
Segment 1: sample-millikan1.mov
(~8 MB)
Segment 2: sample-millikan2.mov
(~6.5 MB)
Segment 3: sample-millikan4.mov
(~ 5 MB)
Wave function of the 3dxz orbital: A QuickTime
(~190K): shows a rotating 3dxz orbital.
From the Atomic Orbitals CD.
Electron distribution of the 2py orbital: A QuickTime
(~1.3 MB): shows XY, YZ, and XZ slices through the 2py orbital revealing
the electron density distribution in 3-dimension.
From the Atomic Orbitals CD.
sp2 hybrid orbitals: An 2s orbital mixed with two 2p orbitals
gives three sp2 orbitals. Here, three GIF pictures showing these three
sp2 hybrid orbitals.
From the Atomic Orbitals CD.
Visualization
of Molecular Structures
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DNA: QuickTime (1.0M, 290x288 pixels)
movies showing a rotating double helix DNA segment. Original molecular images
were generated with HyperChem for Windows.
Protein: QuickTime (4.0M, 321x374
pixels). Ribbon representation of Phosphopyruvate dehydratase x-ray
crystal structure from Brookhaven Protein Data Bank. Images were generated
using MSI's Quanta 3.31. Movie was composed in Adobe Premiere 3.0. The
QuickTime movie uses the animation codec and requires a data transfer
rate of 260 K/sec or higher for smooth playback.
Anaglyphic (red-blue) movie of HIV protease-inhibitor complex:
QuickTime (326K, 350x232 pixels)
Note: You need a pair of red-blue glasses (red on the left-eye
and blue on the right-eye) to view this stereo movie. You can see it
rotating in 3D! It shows a rotating HIV protease-inhibitor complex in
ribbon and sticks representations (x-ray crystallographic data obtained
from Brookhaven Protein Data Bank).
If you do not have the red-blue glasses, you can still see the color
versions: QuickTime (632K, 320x240 pixels).
Aspirin: QuickTime (813K, 320x240
pixels) movies showing aspirin in thin bond, ball and stick, liquorice,
VDW and ray trace representations. Original 24-bit molecular images
were generated with MSI's Quanta from the X-ray structure.
Ethanol: QuickTime (342K, 320x240
pixels) movies showing ethanol in stick, dot surface, disc and shaded
sphere representations. Original molecular images were generated with
HyperChem for Windows.
2-Butanol: This is an interactive tutorial intended to train
the skills of visual correlation of a line-drawing chemical structure
with its 3-dimensional molecular model structure. 2-butanol is used
as an example. Four representations (line-drawing carbon backbone, wire
frame, ball-and-stick, and space filling models) will be shown simultaneously.
The rotation of all four models are synchronized, so you can examine,
compare, and make correlation between these models easier. Try to correlate
the 2D line-drawing carbon backbone with the 3D molecular structures,
by figuring out the position of each atom in different representations.
- On-line:
Macromedia Shockwave (444K). You need Netscape 4.0+ or Internet Explorer
4.0+ AND the Shockwave plug-in/activX to play it on-line.
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Visualization
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Visual Correlation of a Line Drawing Chemical Structure with
a 3D Model: 2-Butanol is used as an example. Sychronized rotation
of four different models. Drag to rotate them. |
All the movies
and graphics in this page were created by Yue-Ling Wong , who also maintain
this page.
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